Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.62■□□□□ 0.25
RNF4P78317 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RNF4P78317 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 IGHV3-47-201ENST00000425060 335 ntBASIC16.62■□□□□ 0.25
RNF4P78317 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 NUS1P1-201ENST00000446295 882 ntBASIC16.62■□□□□ 0.25
RNF4P78317 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 PRELID1P1-202ENST00000567272 903 ntBASIC16.62■□□□□ 0.25
RNF4P78317 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.62■□□□□ 0.25
RNF4P78317 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.62■□□□□ 0.25
RNF4P78317 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 ABALON-201ENST00000629058 1903 ntBASIC16.62■□□□□ 0.25
RNF4P78317 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
RNF4P78317 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RNF4P78317 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RNF4P78317 NSUN5P1-202ENST00000421140 1535 ntBASIC16.61■□□□□ 0.25
RNF4P78317 NSUN5P2-203ENST00000457352 1529 ntBASIC16.61■□□□□ 0.25
RNF4P78317 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RNF4P78317 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF4P78317 MINOS1P3-201ENST00000457048 203 ntBASIC16.61■□□□□ 0.25
RNF4P78317 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
RNF4P78317 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.61■□□□□ 0.25
RNF4P78317 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.61■□□□□ 0.25
RNF4P78317 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.61■□□□□ 0.25
RNF4P78317 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.61■□□□□ 0.25
RNF4P78317 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF4P78317 AC012313.10-201ENST00000623509 926 ntBASIC16.61■□□□□ 0.25
RNF4P78317 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF4P78317 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.61■□□□□ 0.25
RNF4P78317 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RNF4P78317 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF4P78317 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
RNF4P78317 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF4P78317 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.6■□□□□ 0.25
RNF4P78317 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.6■□□□□ 0.25
RNF4P78317 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
RNF4P78317 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RNF4P78317 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.6■□□□□ 0.25
RNF4P78317 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.6■□□□□ 0.25
RNF4P78317 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.6■□□□□ 0.25
RNF4P78317 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.6■□□□□ 0.25
RNF4P78317 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.6■□□□□ 0.25
RNF4P78317 AC005336.2-201ENST00000593183 939 ntBASIC16.6■□□□□ 0.25
RNF4P78317 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RNF4P78317 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
RNF4P78317 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms