Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIMK1P53667 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMK1P53667 AC009947.1-201ENST00000444350 727 ntBASIC17.73■□□□□ 0.43
LIMK1P53667 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMK1P53667 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIMK1P53667 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMK1P53667 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMK1P53667 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIMK1P53667 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
LIMK1P53667 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMK1P53667 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIMK1P53667 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMK1P53667 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMK1P53667 LAGE3P1-201ENST00000425356 484 ntBASIC17.72■□□□□ 0.43
LIMK1P53667 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.72■□□□□ 0.43
LIMK1P53667 AC068472.1-201ENST00000474589 881 ntBASIC17.72■□□□□ 0.43
LIMK1P53667 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.72■□□□□ 0.43
LIMK1P53667 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMK1P53667 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMK1P53667 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMK1P53667 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMK1P53667 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 AC135050.7-201ENST00000624508 2218 ntBASIC17.72■□□□□ 0.43
LIMK1P53667 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LIMK1P53667 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMK1P53667 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
LIMK1P53667 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.71■□□□□ 0.43
LIMK1P53667 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
LIMK1P53667 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMK1P53667 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 MIR770-201ENST00000390219 98 ntBASIC17.71■□□□□ 0.43
LIMK1P53667 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMK1P53667 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMK1P53667 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMK1P53667 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMK1P53667 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMK1P53667 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMK1P53667 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMK1P53667 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMK1P53667 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LIMK1P53667 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMK1P53667 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIMK1P53667 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.71■□□□□ 0.42
LIMK1P53667 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.71■□□□□ 0.42
LIMK1P53667 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMK1P53667 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMK1P53667 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LIMK1P53667 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms