Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 TMPOP1-202ENST00000424642 1267 ntBASIC13.72□□□□□ -0.21
HLA-DMBP28068 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 DUT-205ENST00000558813 769 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 TK2-213ENST00000563369 882 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 AC116562.4-202ENST00000641738 218 ntBASIC13.72□□□□□ -0.21
HLA-DMBP28068 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HLA-DMBP28068 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
HLA-DMBP28068 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 AC104390.1-201ENST00000555663 520 ntBASIC13.71□□□□□ -0.21
HLA-DMBP28068 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 RN7SL850P-201ENST00000579959 291 ntBASIC13.71□□□□□ -0.21
HLA-DMBP28068 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 AC010331.1-201ENST00000611423 582 ntBASIC13.71□□□□□ -0.21
HLA-DMBP28068 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.21
HLA-DMBP28068 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
HLA-DMBP28068 KRT8P7-201ENST00000533003 1432 ntBASIC13.71□□□□□ -0.22
HLA-DMBP28068 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
HLA-DMBP28068 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC005521.1-201ENST00000393351 872 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC113347.1-201ENST00000413321 391 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 AL137013.1-201ENST00000432946 1228 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC128688.1-201ENST00000487626 519 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 EGLN1P1-201ENST00000531623 762 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC010240.3-201ENST00000607688 395 ntBASIC13.7□□□□□ -0.22
HLA-DMBP28068 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 HR-201ENST00000312841 5351 ntTSL 5 BASIC13.7□□□□□ -0.22
HLA-DMBP28068 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HLA-DMBP28068 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms