Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL9A1P20849 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL9A1P20849 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL9A1P20849 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.4■□□□□ 0.54
COL9A1P20849 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.4■□□□□ 0.54
COL9A1P20849 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.4■□□□□ 0.54
COL9A1P20849 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.4■□□□□ 0.54
COL9A1P20849 CRB3P1-201ENST00000449338 276 ntBASIC18.4■□□□□ 0.54
COL9A1P20849 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL9A1P20849 AC067863.1-201ENST00000494933 530 ntBASIC18.4■□□□□ 0.54
COL9A1P20849 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.4■□□□□ 0.54
COL9A1P20849 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.4■□□□□ 0.54
COL9A1P20849 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.4■□□□□ 0.54
COL9A1P20849 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL9A1P20849 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.4■□□□□ 0.54
COL9A1P20849 PGM5P2-202ENST00000637225 1043 ntBASIC18.4■□□□□ 0.54
COL9A1P20849 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.4■□□□□ 0.54
COL9A1P20849 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL9A1P20849 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL9A1P20849 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.4■□□□□ 0.54
COL9A1P20849 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL9A1P20849 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL9A1P20849 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.39■□□□□ 0.53
COL9A1P20849 UGT1A2P-201ENST00000454886 866 ntBASIC18.39■□□□□ 0.53
COL9A1P20849 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.39■□□□□ 0.53
COL9A1P20849 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.39■□□□□ 0.53
COL9A1P20849 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 AL596325.1-201ENST00000563991 1082 ntBASIC18.39■□□□□ 0.53
COL9A1P20849 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.39■□□□□ 0.53
COL9A1P20849 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
COL9A1P20849 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.39■□□□□ 0.53
COL9A1P20849 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
COL9A1P20849 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.39■□□□□ 0.53
COL9A1P20849 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL9A1P20849 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.39■□□□□ 0.53
COL9A1P20849 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL9A1P20849 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.39■□□□□ 0.53
COL9A1P20849 SDHAP2-201ENST00000455183 2001 ntBASIC18.39■□□□□ 0.53
COL9A1P20849 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
COL9A1P20849 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
COL9A1P20849 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.38■□□□□ 0.53
COL9A1P20849 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.38■□□□□ 0.53
COL9A1P20849 GPR53P-205ENST00000457298 1084 ntBASIC18.38■□□□□ 0.53
COL9A1P20849 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.38■□□□□ 0.53
COL9A1P20849 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.38■□□□□ 0.53
COL9A1P20849 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.38■□□□□ 0.53
COL9A1P20849 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.38■□□□□ 0.53
COL9A1P20849 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.38■□□□□ 0.53
COL9A1P20849 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.38■□□□□ 0.53
COL9A1P20849 INTS4P1-201ENST00000438455 1935 ntBASIC18.38■□□□□ 0.53
COL9A1P20849 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.38■□□□□ 0.53
COL9A1P20849 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
COL9A1P20849 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
COL9A1P20849 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL9A1P20849 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.38■□□□□ 0.53
COL9A1P20849 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL9A1P20849 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL9A1P20849 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 CRYGEP-201ENST00000412192 528 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.37■□□□□ 0.53
COL9A1P20849 COX5BP8-201ENST00000416911 349 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.37■□□□□ 0.53
COL9A1P20849 AC113404.2-201ENST00000507884 177 ntBASIC18.37■□□□□ 0.53
COL9A1P20849 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms