Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
NFKB1P19838 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NFKB1P19838 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NFKB1P19838 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
NFKB1P19838 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.3■□□□□ 0.52
NFKB1P19838 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NFKB1P19838 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
NFKB1P19838 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NFKB1P19838 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.3■□□□□ 0.52
NFKB1P19838 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NFKB1P19838 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
NFKB1P19838 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
NFKB1P19838 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 AC022898.2-201ENST00000616822 1312 ntBASIC18.29■□□□□ 0.52
NFKB1P19838 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 KRT18P65-201ENST00000439811 1286 ntBASIC18.29■□□□□ 0.52
NFKB1P19838 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 AL671277.2-201ENST00000458060 996 ntBASIC18.29■□□□□ 0.52
NFKB1P19838 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.29■□□□□ 0.52
NFKB1P19838 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.29■□□□□ 0.52
NFKB1P19838 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.29■□□□□ 0.52
NFKB1P19838 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.29■□□□□ 0.52
NFKB1P19838 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.29■□□□□ 0.52
NFKB1P19838 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
NFKB1P19838 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NFKB1P19838 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.29■□□□□ 0.52
NFKB1P19838 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.29■□□□□ 0.52
NFKB1P19838 LETM1P2-201ENST00000597330 2178 ntBASIC18.28■□□□□ 0.52
NFKB1P19838 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.28■□□□□ 0.52
NFKB1P19838 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.28■□□□□ 0.52
NFKB1P19838 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
NFKB1P19838 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.28■□□□□ 0.52
NFKB1P19838 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NFKB1P19838 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NFKB1P19838 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NFKB1P19838 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.27■□□□□ 0.52
NFKB1P19838 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
NFKB1P19838 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.27■□□□□ 0.52
NFKB1P19838 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.27■□□□□ 0.52
NFKB1P19838 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.27■□□□□ 0.52
NFKB1P19838 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
NFKB1P19838 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.27■□□□□ 0.52
NFKB1P19838 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
NFKB1P19838 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.27■□□□□ 0.52
NFKB1P19838 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.27■□□□□ 0.52
NFKB1P19838 LINC01238-205ENST00000567549 1107 ntBASIC18.27■□□□□ 0.52
NFKB1P19838 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.27■□□□□ 0.52
NFKB1P19838 RNF126P1-202ENST00000569893 925 ntBASIC18.27■□□□□ 0.52
NFKB1P19838 GPR32P1-201ENST00000601788 811 ntBASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms