Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HMGB1P09429 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGB1P09429 PCDHB18P-201ENST00000524813 2368 ntBASIC21.22■□□□□ 0.99
HMGB1P09429 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HMGB1P09429 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
HMGB1P09429 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGB1P09429 AC138932.1-201ENST00000534164 6830 ntBASIC21.21■□□□□ 0.99
HMGB1P09429 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGB1P09429 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HMGB1P09429 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGB1P09429 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGB1P09429 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGB1P09429 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HMGB1P09429 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGB1P09429 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGB1P09429 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGB1P09429 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGB1P09429 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGB1P09429 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGB1P09429 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
HMGB1P09429 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
HMGB1P09429 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.2■□□□□ 0.98
HMGB1P09429 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.2■□□□□ 0.98
HMGB1P09429 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.2■□□□□ 0.98
HMGB1P09429 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB1P09429 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.19■□□□□ 0.98
HMGB1P09429 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGB1P09429 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.19■□□□□ 0.98
HMGB1P09429 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 AC112698.1-201ENST00000510299 916 ntBASIC21.19■□□□□ 0.98
HMGB1P09429 KRT18P21-201ENST00000515767 1272 ntBASIC21.19■□□□□ 0.98
HMGB1P09429 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 AC090340.1-201ENST00000620778 4980 ntBASIC21.19■□□□□ 0.98
HMGB1P09429 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGB1P09429 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
HMGB1P09429 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGB1P09429 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
HMGB1P09429 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 AC005332.8-201ENST00000622750 2735 ntBASIC21.19■□□□□ 0.98
HMGB1P09429 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB1P09429 LINC00896-202ENST00000609602 2128 ntBASIC21.19■□□□□ 0.98
HMGB1P09429 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
HMGB1P09429 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
HMGB1P09429 Z83836.1-201ENST00000624605 1642 ntBASIC21.18■□□□□ 0.98
HMGB1P09429 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.18■□□□□ 0.98
HMGB1P09429 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
HMGB1P09429 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 AL645929.1-201ENST00000420084 975 ntBASIC21.18■□□□□ 0.98
HMGB1P09429 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.18■□□□□ 0.98
HMGB1P09429 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.18■□□□□ 0.98
HMGB1P09429 DDX43P3-201ENST00000441064 443 ntBASIC21.18■□□□□ 0.98
HMGB1P09429 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 RNF126P1-202ENST00000569893 925 ntBASIC21.18■□□□□ 0.98
HMGB1P09429 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HMGB1P09429 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.18■□□□□ 0.98
HMGB1P09429 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.18■□□□□ 0.98
HMGB1P09429 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
HMGB1P09429 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.18■□□□□ 0.98
HMGB1P09429 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
HMGB1P09429 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB1P09429 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HMGB1P09429 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
HMGB1P09429 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB1P09429 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HMGB1P09429 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms