Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.85■■□□□ 1.09
COL4A1P02462 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.85■■□□□ 1.09
COL4A1P02462 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 AC004832.2-201ENST00000426397 482 ntBASIC21.85■■□□□ 1.09
COL4A1P02462 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.85■■□□□ 1.09
COL4A1P02462 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC21.85■■□□□ 1.09
COL4A1P02462 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC21.85■■□□□ 1.09
COL4A1P02462 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.85■■□□□ 1.09
COL4A1P02462 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.85■■□□□ 1.09
COL4A1P02462 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21.84■■□□□ 1.09
COL4A1P02462 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.84■■□□□ 1.09
COL4A1P02462 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.84■■□□□ 1.09
COL4A1P02462 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.84■■□□□ 1.09
COL4A1P02462 AC009949.1-201ENST00000623048 1830 ntBASIC21.84■■□□□ 1.09
COL4A1P02462 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL4A1P02462 AC098818.2-201ENST00000564925 2320 ntBASIC21.84■■□□□ 1.09
COL4A1P02462 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.84■■□□□ 1.09
COL4A1P02462 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.84■■□□□ 1.09
COL4A1P02462 AC040169.1-201ENST00000565382 521 ntBASIC21.84■■□□□ 1.09
COL4A1P02462 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL4A1P02462 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.84■■□□□ 1.09
COL4A1P02462 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.84■■□□□ 1.09
COL4A1P02462 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
COL4A1P02462 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
COL4A1P02462 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL4A1P02462 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.84■■□□□ 1.09
COL4A1P02462 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.84■■□□□ 1.09
COL4A1P02462 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL4A1P02462 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
COL4A1P02462 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.83■■□□□ 1.09
COL4A1P02462 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
COL4A1P02462 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL4A1P02462 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL4A1P02462 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC21.83■■□□□ 1.09
COL4A1P02462 DUTP2-201ENST00000519164 463 ntBASIC21.83■■□□□ 1.09
COL4A1P02462 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.83■■□□□ 1.09
COL4A1P02462 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
COL4A1P02462 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
COL4A1P02462 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL4A1P02462 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL4A1P02462 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 HMGN1P19-201ENST00000436976 333 ntBASIC21.82■■□□□ 1.08
COL4A1P02462 AC136632.2-201ENST00000512891 861 ntBASIC21.82■■□□□ 1.08
COL4A1P02462 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 AC018845.2-201ENST00000568326 409 ntBASIC21.82■■□□□ 1.08
COL4A1P02462 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.82■■□□□ 1.08
COL4A1P02462 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.82■■□□□ 1.08
COL4A1P02462 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.82■■□□□ 1.08
COL4A1P02462 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.82■■□□□ 1.08
COL4A1P02462 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.82■■□□□ 1.08
COL4A1P02462 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.82■■□□□ 1.08
COL4A1P02462 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.82■■□□□ 1.08
COL4A1P02462 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC21.82■■□□□ 1.08
COL4A1P02462 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL4A1P02462 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.82■■□□□ 1.08
COL4A1P02462 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.82■■□□□ 1.08
COL4A1P02462 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC21.82■■□□□ 1.08
COL4A1P02462 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.81■■□□□ 1.08
COL4A1P02462 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
COL4A1P02462 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.81■■□□□ 1.08
COL4A1P02462 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.81■■□□□ 1.08
COL4A1P02462 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
COL4A1P02462 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.81■■□□□ 1.08
COL4A1P02462 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A1P02462 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.81■■□□□ 1.08
COL4A1P02462 AC112482.1-201ENST00000492080 688 ntBASIC21.81■■□□□ 1.08
COL4A1P02462 DHDH-204ENST00000523250 634 ntTSL 5 BASIC21.81■■□□□ 1.08
COL4A1P02462 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.81■■□□□ 1.08
COL4A1P02462 AP001160.2-201ENST00000596071 487 ntBASIC21.81■■□□□ 1.08
COL4A1P02462 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms