Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TNFP01375 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFP01375 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 AC096633.1-201ENST00000422446 749 ntBASIC17.51■□□□□ 0.39
TNFP01375 AC007967.3-201ENST00000434308 558 ntBASIC17.51■□□□□ 0.39
TNFP01375 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFP01375 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFP01375 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFP01375 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.51■□□□□ 0.39
TNFP01375 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFP01375 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TNFP01375 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFP01375 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TNFP01375 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFP01375 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFP01375 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.5■□□□□ 0.39
TNFP01375 AC093909.1-201ENST00000504731 1122 ntBASIC17.5■□□□□ 0.39
TNFP01375 RNPS1P1-201ENST00000507437 918 ntBASIC17.5■□□□□ 0.39
TNFP01375 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.5■□□□□ 0.39
TNFP01375 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
TNFP01375 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 AC098818.2-201ENST00000564925 2320 ntBASIC17.5■□□□□ 0.39
TNFP01375 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFP01375 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TNFP01375 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFP01375 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFP01375 AL096828.2-201ENST00000567259 1965 ntBASIC17.49■□□□□ 0.39
TNFP01375 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.49■□□□□ 0.39
TNFP01375 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.49■□□□□ 0.39
TNFP01375 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.49■□□□□ 0.39
TNFP01375 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TNFP01375 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
TNFP01375 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.49■□□□□ 0.39
TNFP01375 AL031284.1-201ENST00000419297 478 ntBASIC17.49■□□□□ 0.39
TNFP01375 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.49■□□□□ 0.39
TNFP01375 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.49■□□□□ 0.39
TNFP01375 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.49■□□□□ 0.39
TNFP01375 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.49■□□□□ 0.39
TNFP01375 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TNFP01375 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms