Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SEMA3DO95025 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SEMA3DO95025 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SEMA3DO95025 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.23■□□□□ 0.35
SEMA3DO95025 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.23■□□□□ 0.35
SEMA3DO95025 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.23■□□□□ 0.35
SEMA3DO95025 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.23■□□□□ 0.35
SEMA3DO95025 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.23■□□□□ 0.35
SEMA3DO95025 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.23■□□□□ 0.35
SEMA3DO95025 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SEMA3DO95025 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 AC012313.1-201ENST00000593393 3059 ntBASIC17.23■□□□□ 0.35
SEMA3DO95025 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.23■□□□□ 0.35
SEMA3DO95025 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SEMA3DO95025 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SEMA3DO95025 GNAS-203ENST00000306120 1878 ntBASIC17.22■□□□□ 0.35
SEMA3DO95025 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SEMA3DO95025 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SEMA3DO95025 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SEMA3DO95025 KRT18P48-201ENST00000434763 852 ntBASIC17.22■□□□□ 0.35
SEMA3DO95025 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.22■□□□□ 0.35
SEMA3DO95025 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
SEMA3DO95025 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.22■□□□□ 0.35
SEMA3DO95025 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SEMA3DO95025 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.22■□□□□ 0.35
SEMA3DO95025 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
SEMA3DO95025 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SEMA3DO95025 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SEMA3DO95025 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms