Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC22.52■■□□□ 1.2
CACNA1FO60840 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC22.52■■□□□ 1.2
CACNA1FO60840 AC106795.1-205ENST00000512851 1056 ntBASIC22.52■■□□□ 1.2
CACNA1FO60840 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC22.52■■□□□ 1.2
CACNA1FO60840 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
CACNA1FO60840 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CACNA1FO60840 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC22.51■■□□□ 1.19
CACNA1FO60840 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC22.51■■□□□ 1.19
CACNA1FO60840 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CACNA1FO60840 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC22.51■■□□□ 1.19
CACNA1FO60840 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
CACNA1FO60840 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 SART3-203ENST00000546611 1184 ntBASIC22.51■■□□□ 1.19
CACNA1FO60840 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 PC-208ENST00000529047 1607 ntTSL 3 BASIC22.51■■□□□ 1.19
CACNA1FO60840 SIRPAP1-201ENST00000448467 1770 ntBASIC22.51■■□□□ 1.19
CACNA1FO60840 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CACNA1FO60840 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC22.51■■□□□ 1.19
CACNA1FO60840 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC22.51■■□□□ 1.19
CACNA1FO60840 GATB-213ENST00000515812 1893 ntTSL 5 BASIC22.51■■□□□ 1.19
CACNA1FO60840 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CACNA1FO60840 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1FO60840 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CACNA1FO60840 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC22.5■■□□□ 1.19
CACNA1FO60840 AP002469.2-201ENST00000531724 424 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
CACNA1FO60840 AP001269.4-201ENST00000609611 512 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 LINC01451-201ENST00000623792 534 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC22.5■■□□□ 1.19
CACNA1FO60840 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC22.5■■□□□ 1.19
CACNA1FO60840 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
CACNA1FO60840 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.5■■□□□ 1.19
CACNA1FO60840 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC22.5■■□□□ 1.19
CACNA1FO60840 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.5■■□□□ 1.19
CACNA1FO60840 NCF1C-201ENST00000438382 1427 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 FGFR3P6-201ENST00000457012 610 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 AL160237.2-201ENST00000556165 472 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 AC091304.2-201ENST00000564639 760 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC22.5■■□□□ 1.19
CACNA1FO60840 MIR7706-201ENST00000613747 67 ntBASIC22.5■■□□□ 1.19
CACNA1FO60840 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC22.5■■□□□ 1.19
CACNA1FO60840 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CACNA1FO60840 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
CACNA1FO60840 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC22.49■■□□□ 1.19
CACNA1FO60840 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC22.49■■□□□ 1.19
CACNA1FO60840 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC22.49■■□□□ 1.19
CACNA1FO60840 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC22.49■■□□□ 1.19
CACNA1FO60840 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC22.49■■□□□ 1.19
CACNA1FO60840 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CACNA1FO60840 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC22.49■■□□□ 1.19
CACNA1FO60840 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CACNA1FO60840 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC22.49■■□□□ 1.19
CACNA1FO60840 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC22.49■■□□□ 1.19
CACNA1FO60840 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC22.48■■□□□ 1.19
CACNA1FO60840 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC22.48■■□□□ 1.19
CACNA1FO60840 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
CACNA1FO60840 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC22.48■■□□□ 1.19
CACNA1FO60840 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC22.48■■□□□ 1.19
CACNA1FO60840 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC22.48■■□□□ 1.19
CACNA1FO60840 CYGB-205ENST00000590175 830 ntTSL 3 BASIC22.48■■□□□ 1.19
CACNA1FO60840 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
CACNA1FO60840 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CACNA1FO60840 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC22.48■■□□□ 1.19
CACNA1FO60840 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
CACNA1FO60840 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CACNA1FO60840 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms