Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.63■□□□□ 0.73
CLDN3O15551 AC012615.1-201ENST00000565797 1299 ntBASIC19.63■□□□□ 0.73
CLDN3O15551 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.63■□□□□ 0.73
CLDN3O15551 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.63■□□□□ 0.73
CLDN3O15551 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CLDN3O15551 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN3O15551 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN3O15551 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN3O15551 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 AC022898.2-201ENST00000616822 1312 ntBASIC19.62■□□□□ 0.73
CLDN3O15551 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN3O15551 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 KRT17P6-201ENST00000453795 1220 ntBASIC19.62■□□□□ 0.73
CLDN3O15551 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.62■□□□□ 0.73
CLDN3O15551 AC104819.1-201ENST00000504587 486 ntBASIC19.62■□□□□ 0.73
CLDN3O15551 AC112698.1-201ENST00000510299 916 ntBASIC19.62■□□□□ 0.73
CLDN3O15551 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.62■□□□□ 0.73
CLDN3O15551 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN3O15551 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CLDN3O15551 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.62■□□□□ 0.73
CLDN3O15551 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN3O15551 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CLDN3O15551 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN3O15551 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.61■□□□□ 0.73
CLDN3O15551 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 ABALON-201ENST00000629058 1903 ntBASIC19.61■□□□□ 0.73
CLDN3O15551 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CLDN3O15551 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.61■□□□□ 0.73
CLDN3O15551 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 AC091607.1-201ENST00000490318 1060 ntBASIC19.61■□□□□ 0.73
CLDN3O15551 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.61■□□□□ 0.73
CLDN3O15551 AC074051.2-201ENST00000565115 352 ntBASIC19.61■□□□□ 0.73
CLDN3O15551 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.61■□□□□ 0.73
CLDN3O15551 AP005901.3-202ENST00000581653 237 ntBASIC19.61■□□□□ 0.73
CLDN3O15551 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.61■□□□□ 0.73
CLDN3O15551 CLEC4GP1-201ENST00000596555 870 ntBASIC19.61■□□□□ 0.73
CLDN3O15551 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.61■□□□□ 0.73
CLDN3O15551 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.61■□□□□ 0.73
CLDN3O15551 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CLDN3O15551 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CLDN3O15551 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CLDN3O15551 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.61■□□□□ 0.73
CLDN3O15551 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN3O15551 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
CLDN3O15551 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLDN3O15551 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN3O15551 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN3O15551 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms