Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SDCBPO00560 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
SDCBPO00560 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.32■□□□□ 0.04
SDCBPO00560 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.32■□□□□ 0.04
SDCBPO00560 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 HIST1H2APS4-201ENST00000362070 348 ntBASIC15.32■□□□□ 0.04
SDCBPO00560 MIR564-202ENST00000385049 94 ntBASIC15.32■□□□□ 0.04
SDCBPO00560 SLC25A1P2-201ENST00000430693 912 ntBASIC15.32■□□□□ 0.04
SDCBPO00560 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.32■□□□□ 0.04
SDCBPO00560 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.32■□□□□ 0.04
SDCBPO00560 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SDCBPO00560 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SDCBPO00560 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SDCBPO00560 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SDCBPO00560 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SDCBPO00560 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.32■□□□□ 0.04
SDCBPO00560 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SDCBPO00560 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
SDCBPO00560 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.31■□□□□ 0.04
SDCBPO00560 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SDCBPO00560 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.31■□□□□ 0.04
SDCBPO00560 MIR1238-201ENST00000408483 83 ntBASIC15.31■□□□□ 0.04
SDCBPO00560 AL390955.1-201ENST00000428694 934 ntBASIC15.31■□□□□ 0.04
SDCBPO00560 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.31■□□□□ 0.04
SDCBPO00560 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.31■□□□□ 0.04
SDCBPO00560 CCR12P-201ENST00000446203 998 ntBASIC15.31■□□□□ 0.04
SDCBPO00560 TSPY17P-201ENST00000450329 467 ntBASIC15.31■□□□□ 0.04
SDCBPO00560 MIR3180-5-201ENST00000583743 153 ntBASIC15.31■□□□□ 0.04
SDCBPO00560 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SDCBPO00560 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 KRT8P50-201ENST00000562022 1438 ntBASIC15.31■□□□□ 0.04
SDCBPO00560 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC15.31■□□□□ 0.04
SDCBPO00560 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.31■□□□□ 0.04
SDCBPO00560 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SDCBPO00560 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SDCBPO00560 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.31■□□□□ 0.04
SDCBPO00560 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SDCBPO00560 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SDCBPO00560 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SDCBPO00560 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms