Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 THEM4-205ENST00000489410 643 ntTSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 PRSS44-201ENST00000515154 1146 ntBASIC13.17□□□□□ -0.3
SMKR1H3BMG3 PRKY-204ENST00000533551 1019 ntBASIC13.17□□□□□ -0.3
SMKR1H3BMG3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 AC079328.2-201ENST00000561241 3354 ntBASIC13.17□□□□□ -0.3
SMKR1H3BMG3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 AC106886.4-201ENST00000623557 2502 ntBASIC13.16□□□□□ -0.3
SMKR1H3BMG3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 PKD1P5-201ENST00000532415 10291 ntBASIC13.16□□□□□ -0.3
SMKR1H3BMG3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 AC004264.1-201ENST00000608354 794 ntBASIC13.16□□□□□ -0.3
SMKR1H3BMG3 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 AC011270.2-201ENST00000624293 2550 ntBASIC13.16□□□□□ -0.3
SMKR1H3BMG3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.16□□□□□ -0.3
SMKR1H3BMG3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 PCDHA14-201ENST00000506751 2298 ntBASIC13.15□□□□□ -0.3
SMKR1H3BMG3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 AC073111.5-205ENST00000641717 521 ntBASIC13.15□□□□□ -0.3
SMKR1H3BMG3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC13.15□□□□□ -0.3
SMKR1H3BMG3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms