Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 PRELID1P1-202ENST00000567272 903 ntBASIC17.45■□□□□ 0.38
VPS4AQ9UN37 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 GPAT2P1-201ENST00000444924 1672 ntBASIC17.45■□□□□ 0.38
VPS4AQ9UN37 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4AQ9UN37 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 AC034236.2-201ENST00000606662 1610 ntBASIC17.44■□□□□ 0.38
VPS4AQ9UN37 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 ESPNP-201ENST00000270691 2015 ntBASIC17.44■□□□□ 0.38
VPS4AQ9UN37 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 ATP5G2P1-201ENST00000433580 426 ntBASIC17.44■□□□□ 0.38
VPS4AQ9UN37 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4AQ9UN37 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.43■□□□□ 0.38
VPS4AQ9UN37 KRT18P38-201ENST00000449496 1282 ntBASIC17.43■□□□□ 0.38
VPS4AQ9UN37 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 MIR3652-201ENST00000579335 131 ntBASIC17.43■□□□□ 0.38
VPS4AQ9UN37 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS4AQ9UN37 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AC138028.4-201ENST00000564984 1845 ntBASIC17.42■□□□□ 0.38
VPS4AQ9UN37 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms