Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 AIRN-201ENST00000601203 4374 ntBASIC19.21■□□□□ 0.67
SIX4Q9UIU6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 AC096633.1-201ENST00000422446 749 ntBASIC19.21■□□□□ 0.67
SIX4Q9UIU6 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 AL732292.2-201ENST00000609649 430 ntBASIC19.21■□□□□ 0.67
SIX4Q9UIU6 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX4Q9UIU6 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.66
SIX4Q9UIU6 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 NOC2LP1-202ENST00000452600 2235 ntBASIC19.2■□□□□ 0.66
SIX4Q9UIU6 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 TSPY19P-201ENST00000418461 509 ntBASIC19.2■□□□□ 0.66
SIX4Q9UIU6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 TSPY18P-201ENST00000441642 509 ntBASIC19.2■□□□□ 0.66
SIX4Q9UIU6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 AC097374.2-201ENST00000618617 1306 ntBASIC19.2■□□□□ 0.66
SIX4Q9UIU6 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX4Q9UIU6 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 AC010460.3-201ENST00000511359 1579 ntBASIC19.19■□□□□ 0.66
SIX4Q9UIU6 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 AC007613.1-201ENST00000572811 2597 ntBASIC19.19■□□□□ 0.66
SIX4Q9UIU6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 AC096582.2-201ENST00000510860 516 ntBASIC19.19■□□□□ 0.66
SIX4Q9UIU6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 TP73-AS1-210ENST00000637775 1455 ntBASIC19.19■□□□□ 0.66
SIX4Q9UIU6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SIX4Q9UIU6 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms