Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AC046158.3-201ENST00000624947 2558 ntBASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AC004980.1-204ENST00000429707 299 ntBASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 FAM210CP-201ENST00000445714 574 ntBASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 CROCCP1-201ENST00000426910 5675 ntBASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AL391005.1-201ENST00000623953 2435 ntBASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 AC108860.2-201ENST00000562760 2183 ntBASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
DEPDC4Q8N2C3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 FITM1-202ENST00000559294 800 ntBASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 C2orf69P3-201ENST00000565542 1120 ntBASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.77■□□□□ 0.28
DEPDC4Q8N2C3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.77■□□□□ 0.27
DEPDC4Q8N2C3 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 RCC2P3-201ENST00000418112 1537 ntBASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 AP000593.1-201ENST00000393668 712 ntBASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 AC004951.3-201ENST00000418645 1148 ntBASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 B3GAT3P1-201ENST00000471720 806 ntBASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 Z85996.1-201ENST00000494644 937 ntBASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
DEPDC4Q8N2C3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms