Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.52■□□□□ 0.72
VPS52Q8N1B4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS52Q8N1B4 AC023511.2-201ENST00000618803 211 ntBASIC19.52■□□□□ 0.72
VPS52Q8N1B4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS52Q8N1B4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS52Q8N1B4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS52Q8N1B4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS52Q8N1B4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.52■□□□□ 0.71
VPS52Q8N1B4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS52Q8N1B4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS52Q8N1B4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 AC120114.3-201ENST00000611923 658 ntBASIC19.51■□□□□ 0.71
VPS52Q8N1B4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS52Q8N1B4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 AL590627.1-203ENST00000421194 1026 ntBASIC19.5■□□□□ 0.71
VPS52Q8N1B4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 BNIP3P18-201ENST00000593976 575 ntBASIC19.5■□□□□ 0.71
VPS52Q8N1B4 AL591684.3-201ENST00000605187 298 ntBASIC19.5■□□□□ 0.71
VPS52Q8N1B4 BX640515.1-201ENST00000617215 977 ntBASIC19.5■□□□□ 0.71
VPS52Q8N1B4 TP73-AS1-207ENST00000624167 988 ntBASIC19.5■□□□□ 0.71
VPS52Q8N1B4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS52Q8N1B4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 AC064862.7-201ENST00000604520 867 ntBASIC19.49■□□□□ 0.71
VPS52Q8N1B4 GPALPP1-207ENST00000611650 899 ntBASIC19.49■□□□□ 0.71
VPS52Q8N1B4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VPS52Q8N1B4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS52Q8N1B4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS52Q8N1B4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms