Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SSRP1Q08945 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.9■□□□□ 0.94
SSRP1Q08945 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.9■□□□□ 0.94
SSRP1Q08945 AL031133.1-201ENST00000406807 723 ntBASIC20.9■□□□□ 0.94
SSRP1Q08945 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
SSRP1Q08945 TSPY12P-201ENST00000421279 868 ntBASIC20.9■□□□□ 0.94
SSRP1Q08945 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.9■□□□□ 0.94
SSRP1Q08945 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.9■□□□□ 0.94
SSRP1Q08945 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.9■□□□□ 0.94
SSRP1Q08945 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.9■□□□□ 0.94
SSRP1Q08945 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.9■□□□□ 0.94
SSRP1Q08945 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.9■□□□□ 0.94
SSRP1Q08945 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
SSRP1Q08945 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
SSRP1Q08945 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
SSRP1Q08945 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSRP1Q08945 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SSRP1Q08945 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.89■□□□□ 0.94
SSRP1Q08945 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SSRP1Q08945 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SSRP1Q08945 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.89■□□□□ 0.94
SSRP1Q08945 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.89■□□□□ 0.94
SSRP1Q08945 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.89■□□□□ 0.93
SSRP1Q08945 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SSRP1Q08945 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSRP1Q08945 AL645929.1-201ENST00000420084 975 ntBASIC20.89■□□□□ 0.93
SSRP1Q08945 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.89■□□□□ 0.93
SSRP1Q08945 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSRP1Q08945 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SSRP1Q08945 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.89■□□□□ 0.93
SSRP1Q08945 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.89■□□□□ 0.93
SSRP1Q08945 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSRP1Q08945 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSRP1Q08945 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SSRP1Q08945 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SSRP1Q08945 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.88■□□□□ 0.93
SSRP1Q08945 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.88■□□□□ 0.93
SSRP1Q08945 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.88■□□□□ 0.93
SSRP1Q08945 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.88■□□□□ 0.93
SSRP1Q08945 AL390719.2-201ENST00000606993 987 ntBASIC20.88■□□□□ 0.93
SSRP1Q08945 AL590326.2-201ENST00000625139 305 ntBASIC20.88■□□□□ 0.93
SSRP1Q08945 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 Z83836.1-201ENST00000624605 1642 ntBASIC20.88■□□□□ 0.93
SSRP1Q08945 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 AC100803.2-201ENST00000562459 1963 ntBASIC20.88■□□□□ 0.93
SSRP1Q08945 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SSRP1Q08945 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SSRP1Q08945 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSRP1Q08945 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.87■□□□□ 0.93
SSRP1Q08945 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.87■□□□□ 0.93
SSRP1Q08945 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.87■□□□□ 0.93
SSRP1Q08945 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.87■□□□□ 0.93
SSRP1Q08945 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.87■□□□□ 0.93
SSRP1Q08945 AL136038.3-201ENST00000561909 1096 ntBASIC20.87■□□□□ 0.93
SSRP1Q08945 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.87■□□□□ 0.93
SSRP1Q08945 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.87■□□□□ 0.93
SSRP1Q08945 AC009154.2-201ENST00000621177 724 ntBASIC20.87■□□□□ 0.93
SSRP1Q08945 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.87■□□□□ 0.93
SSRP1Q08945 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSRP1Q08945 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SSRP1Q08945 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SSRP1Q08945 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSRP1Q08945 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SSRP1Q08945 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SSRP1Q08945 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSRP1Q08945 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms