Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.8■□□□□ 0.28
CDH12P55289 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.8■□□□□ 0.28
CDH12P55289 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.8■□□□□ 0.28
CDH12P55289 MIR1238-201ENST00000408483 83 ntBASIC16.8■□□□□ 0.28
CDH12P55289 CCR12P-201ENST00000446203 998 ntBASIC16.8■□□□□ 0.28
CDH12P55289 SNORA78-201ENST00000459373 127 ntBASIC16.8■□□□□ 0.28
CDH12P55289 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH12P55289 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH12P55289 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 CR769767.2-201ENST00000622735 460 ntBASIC16.8■□□□□ 0.28
CDH12P55289 AP006294.2-201ENST00000641667 209 ntBASIC16.8■□□□□ 0.28
CDH12P55289 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CDH12P55289 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 AC093010.1-201ENST00000473625 1624 ntBASIC16.8■□□□□ 0.28
CDH12P55289 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH12P55289 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDH12P55289 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDH12P55289 KRT18P55-202ENST00000578578 1546 ntBASIC16.8■□□□□ 0.28
CDH12P55289 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH12P55289 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
CDH12P55289 KRT18P23-201ENST00000435622 1283 ntBASIC16.79■□□□□ 0.28
CDH12P55289 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.79■□□□□ 0.28
CDH12P55289 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.79■□□□□ 0.28
CDH12P55289 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.79■□□□□ 0.28
CDH12P55289 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.79■□□□□ 0.28
CDH12P55289 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH12P55289 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
CDH12P55289 HOXB1-202ENST00000577092 1414 ntBASIC16.79■□□□□ 0.28
CDH12P55289 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH12P55289 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH12P55289 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH12P55289 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CDH12P55289 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH12P55289 AC007663.1-201ENST00000438948 1240 ntBASIC16.78■□□□□ 0.28
CDH12P55289 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.78■□□□□ 0.28
CDH12P55289 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH12P55289 BX088651.1-201ENST00000540551 451 ntBASIC16.78■□□□□ 0.28
CDH12P55289 AL355075.4-201ENST00000554988 638 ntBASIC16.78■□□□□ 0.28
CDH12P55289 WWOX-216ENST00000569818 525 ntBASIC16.78■□□□□ 0.28
CDH12P55289 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CDH12P55289 AC116562.4-202ENST00000641738 218 ntBASIC16.78■□□□□ 0.28
CDH12P55289 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms