Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 AL355802.2-201ENST00000402069 882 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 KRASP1-201ENST00000407852 552 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 Z85996.1-201ENST00000494644 937 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 PRSS44-201ENST00000515154 1146 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.97□□□□□ -0.01
HOXA1P49639 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXA1P49639 AC142086.2-201ENST00000569753 217 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 KRT8P11-201ENST00000409686 1436 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 AC112777.1-201ENST00000540175 1423 ntBASIC14.97□□□□□ -0.01
HOXA1P49639 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXA1P49639 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXA1P49639 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.96□□□□□ -0.01
HOXA1P49639 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 DOC2GP-204ENST00000639052 2548 ntBASIC14.96□□□□□ -0.01
HOXA1P49639 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.96□□□□□ -0.01
HOXA1P49639 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 RNA5SP413-201ENST00000516373 109 ntBASIC14.96□□□□□ -0.01
HOXA1P49639 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 MTDHP1-201ENST00000605323 784 ntBASIC14.96□□□□□ -0.01
HOXA1P49639 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HOXA1P49639 AC131212.4-201ENST00000623606 975 ntBASIC14.96□□□□□ -0.01
HOXA1P49639 AL023875.1-201ENST00000640777 796 ntBASIC14.96□□□□□ -0.01
HOXA1P49639 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.96□□□□□ -0.01
HOXA1P49639 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.96□□□□□ -0.01
HOXA1P49639 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.96□□□□□ -0.02
HOXA1P49639 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
HOXA1P49639 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.96□□□□□ -0.02
HOXA1P49639 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HOXA1P49639 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.95□□□□□ -0.02
HOXA1P49639 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms