Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC23.59■■□□□ 1.37
COL18A1P39060 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC23.59■■□□□ 1.37
COL18A1P39060 AC004790.2-201ENST00000623588 572 ntBASIC23.59■■□□□ 1.37
COL18A1P39060 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 AC126763.1-201ENST00000552015 2118 ntBASIC23.59■■□□□ 1.37
COL18A1P39060 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL18A1P39060 GOLGA6L17P-202ENST00000614358 1398 ntBASIC23.59■■□□□ 1.37
COL18A1P39060 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.58■■□□□ 1.37
COL18A1P39060 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL18A1P39060 AC116562.4-201ENST00000641316 2276 ntBASIC23.58■■□□□ 1.37
COL18A1P39060 COX5BP2-201ENST00000392354 334 ntBASIC23.58■■□□□ 1.37
COL18A1P39060 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC23.58■■□□□ 1.37
COL18A1P39060 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC23.58■■□□□ 1.37
COL18A1P39060 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC23.58■■□□□ 1.37
COL18A1P39060 RHOQP3-201ENST00000437982 621 ntBASIC23.58■■□□□ 1.37
COL18A1P39060 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC23.58■■□□□ 1.37
COL18A1P39060 S100A2-206ENST00000497140 697 ntTSL 2 BASIC23.58■■□□□ 1.37
COL18A1P39060 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
COL18A1P39060 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC23.58■■□□□ 1.37
COL18A1P39060 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL18A1P39060 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC23.58■■□□□ 1.37
COL18A1P39060 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
COL18A1P39060 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC23.58■■□□□ 1.37
COL18A1P39060 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
COL18A1P39060 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
COL18A1P39060 PC-214ENST00000628663 1470 ntTSL 5 BASIC23.58■■□□□ 1.36
COL18A1P39060 CALY-203ENST00000368558 825 ntTSL 5 BASIC23.57■■□□□ 1.36
COL18A1P39060 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
COL18A1P39060 MRPL20P1-201ENST00000400819 433 ntBASIC23.57■■□□□ 1.36
COL18A1P39060 TSEN15P1-201ENST00000423257 515 ntBASIC23.57■■□□□ 1.36
COL18A1P39060 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC23.57■■□□□ 1.36
COL18A1P39060 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC23.57■■□□□ 1.36
COL18A1P39060 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC23.57■■□□□ 1.36
COL18A1P39060 OR7E47P-204ENST00000575924 449 ntBASIC23.57■■□□□ 1.36
COL18A1P39060 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC23.57■■□□□ 1.36
COL18A1P39060 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
COL18A1P39060 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.57■■□□□ 1.36
COL18A1P39060 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
COL18A1P39060 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
COL18A1P39060 PRSS29P-201ENST00000440800 595 ntBASIC23.57■■□□□ 1.36
COL18A1P39060 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC23.57■■□□□ 1.36
COL18A1P39060 KRT19P2-202ENST00000557173 1012 ntBASIC23.57■■□□□ 1.36
COL18A1P39060 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL18A1P39060 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
COL18A1P39060 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.56■■□□□ 1.36
COL18A1P39060 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC23.56■■□□□ 1.36
COL18A1P39060 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
COL18A1P39060 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
COL18A1P39060 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.56■■□□□ 1.36
COL18A1P39060 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL18A1P39060 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC23.56■■□□□ 1.36
COL18A1P39060 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 AC003669.1-201ENST00000334569 611 ntBASIC23.55■■□□□ 1.36
COL18A1P39060 AL139400.1-201ENST00000366220 510 ntBASIC23.55■■□□□ 1.36
COL18A1P39060 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC23.55■■□□□ 1.36
COL18A1P39060 AL645939.2-201ENST00000427340 991 ntBASIC23.55■■□□□ 1.36
COL18A1P39060 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC23.55■■□□□ 1.36
COL18A1P39060 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC23.55■■□□□ 1.36
COL18A1P39060 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC23.55■■□□□ 1.36
COL18A1P39060 DUTP2-201ENST00000519164 463 ntBASIC23.55■■□□□ 1.36
COL18A1P39060 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC23.55■■□□□ 1.36
COL18A1P39060 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 STOM-202ENST00000347359 870 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms