Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 LINC01126-201ENST00000623515 1646 ntBASIC17.21■□□□□ 0.35
MSX2P35548 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.21■□□□□ 0.35
MSX2P35548 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.21■□□□□ 0.35
MSX2P35548 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSX2P35548 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
MSX2P35548 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.21■□□□□ 0.35
MSX2P35548 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.21■□□□□ 0.35
MSX2P35548 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.21■□□□□ 0.35
MSX2P35548 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.21■□□□□ 0.35
MSX2P35548 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.21■□□□□ 0.35
MSX2P35548 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
MSX2P35548 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.21■□□□□ 0.35
MSX2P35548 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.21■□□□□ 0.35
MSX2P35548 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSX2P35548 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
MSX2P35548 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.21■□□□□ 0.34
MSX2P35548 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
MSX2P35548 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
MSX2P35548 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.2■□□□□ 0.34
MSX2P35548 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 GPAT2P1-201ENST00000444924 1672 ntBASIC17.2■□□□□ 0.34
MSX2P35548 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MSX2P35548 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MSX2P35548 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MSX2P35548 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.2■□□□□ 0.34
MSX2P35548 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.2■□□□□ 0.34
MSX2P35548 AL023284.2-201ENST00000405850 579 ntBASIC17.2■□□□□ 0.34
MSX2P35548 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
MSX2P35548 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.2■□□□□ 0.34
MSX2P35548 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.2■□□□□ 0.34
MSX2P35548 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 AC069544.1-201ENST00000609399 999 ntBASIC17.2■□□□□ 0.34
MSX2P35548 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 AC034236.2-201ENST00000606662 1610 ntBASIC17.2■□□□□ 0.34
MSX2P35548 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 AC100803.2-201ENST00000562459 1963 ntBASIC17.2■□□□□ 0.34
MSX2P35548 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
MSX2P35548 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
MSX2P35548 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSX2P35548 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSX2P35548 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.19■□□□□ 0.34
MSX2P35548 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.19■□□□□ 0.34
MSX2P35548 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
MSX2P35548 AL121761.2-201ENST00000598007 1648 ntBASIC17.19■□□□□ 0.34
MSX2P35548 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.19■□□□□ 0.34
MSX2P35548 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.19■□□□□ 0.34
MSX2P35548 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.19■□□□□ 0.34
MSX2P35548 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.19■□□□□ 0.34
MSX2P35548 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.19■□□□□ 0.34
MSX2P35548 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
MSX2P35548 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
MSX2P35548 AC011298.2-201ENST00000617989 482 ntBASIC17.19■□□□□ 0.34
MSX2P35548 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms