Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
RORAP35398 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RORAP35398 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.33
RORAP35398 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.08■□□□□ 0.33
RORAP35398 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RORAP35398 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.08■□□□□ 0.32
RORAP35398 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.08■□□□□ 0.32
RORAP35398 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RORAP35398 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.08■□□□□ 0.32
RORAP35398 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.08■□□□□ 0.32
RORAP35398 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.08■□□□□ 0.32
RORAP35398 AP002469.2-201ENST00000531724 424 ntBASIC17.08■□□□□ 0.32
RORAP35398 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.08■□□□□ 0.32
RORAP35398 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.08■□□□□ 0.32
RORAP35398 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.08■□□□□ 0.32
RORAP35398 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.08■□□□□ 0.32
RORAP35398 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.08■□□□□ 0.32
RORAP35398 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 AC114341.1-201ENST00000618070 349 ntBASIC17.08■□□□□ 0.32
RORAP35398 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.08■□□□□ 0.32
RORAP35398 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
RORAP35398 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RORAP35398 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.08■□□□□ 0.32
RORAP35398 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
RORAP35398 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RORAP35398 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
RORAP35398 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.07■□□□□ 0.32
RORAP35398 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RORAP35398 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.07■□□□□ 0.32
RORAP35398 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.07■□□□□ 0.32
RORAP35398 KRT18P65-201ENST00000439811 1286 ntBASIC17.07■□□□□ 0.32
RORAP35398 MTCL1P1-201ENST00000446207 792 ntBASIC17.07■□□□□ 0.32
RORAP35398 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.07■□□□□ 0.32
RORAP35398 SAPCD2P3-201ENST00000455031 850 ntBASIC17.07■□□□□ 0.32
RORAP35398 AC096582.2-201ENST00000510860 516 ntBASIC17.07■□□□□ 0.32
RORAP35398 AC106795.1-205ENST00000512851 1056 ntBASIC17.07■□□□□ 0.32
RORAP35398 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
RORAP35398 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RORAP35398 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.07■□□□□ 0.32
RORAP35398 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RORAP35398 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.07■□□□□ 0.32
RORAP35398 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RORAP35398 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
RORAP35398 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.06■□□□□ 0.32
RORAP35398 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
RORAP35398 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.06■□□□□ 0.32
RORAP35398 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
RORAP35398 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.06■□□□□ 0.32
RORAP35398 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.06■□□□□ 0.32
RORAP35398 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
RORAP35398 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.06■□□□□ 0.32
RORAP35398 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.06■□□□□ 0.32
RORAP35398 MIR5100-201ENST00000579544 119 ntBASIC17.06■□□□□ 0.32
RORAP35398 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms