Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.79■□□□□ 0.76
COL6A1P12109 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL6A1P12109 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL6A1P12109 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A1P12109 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A1P12109 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.78■□□□□ 0.76
COL6A1P12109 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL6A1P12109 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A1P12109 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A1P12109 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A1P12109 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A1P12109 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A1P12109 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A1P12109 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL6A1P12109 HLA-J-203ENST00000494367 1087 ntBASIC19.78■□□□□ 0.76
COL6A1P12109 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.78■□□□□ 0.76
COL6A1P12109 IGHV3-65-201ENST00000523210 341 ntBASIC19.78■□□□□ 0.76
COL6A1P12109 MIR4751-201ENST00000578027 74 ntBASIC19.78■□□□□ 0.76
COL6A1P12109 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL6A1P12109 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A1P12109 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A1P12109 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A1P12109 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A1P12109 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.77■□□□□ 0.76
COL6A1P12109 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A1P12109 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.77■□□□□ 0.76
COL6A1P12109 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A1P12109 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A1P12109 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.77■□□□□ 0.76
COL6A1P12109 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
COL6A1P12109 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.77■□□□□ 0.76
COL6A1P12109 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A1P12109 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.77■□□□□ 0.76
COL6A1P12109 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A1P12109 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL6A1P12109 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.77■□□□□ 0.76
COL6A1P12109 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A1P12109 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A1P12109 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A1P12109 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.76■□□□□ 0.75
COL6A1P12109 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 KRT8P47-201ENST00000604727 1398 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 AC096633.1-201ENST00000422446 749 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 AP000344.2-201ENST00000512987 629 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 PDPK2P-202ENST00000562415 1191 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 AC008667.4-201ENST00000607370 168 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.76■□□□□ 0.75
COL6A1P12109 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms