Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC11.15□□□□□ -0.62
APOBP04114 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC11.15□□□□□ -0.62
APOBP04114 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.15□□□□□ -0.62
APOBP04114 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC11.15□□□□□ -0.62
APOBP04114 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC11.15□□□□□ -0.62
APOBP04114 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC11.15□□□□□ -0.62
APOBP04114 AC004877.2-201ENST00000623941 599 ntBASIC11.15□□□□□ -0.62
APOBP04114 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC11.15□□□□□ -0.62
APOBP04114 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC11.15□□□□□ -0.62
APOBP04114 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
APOBP04114 HNRNPFP1-201ENST00000391730 1133 ntBASIC11.15□□□□□ -0.62
APOBP04114 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC11.15□□□□□ -0.62
APOBP04114 AP005018.1-201ENST00000525475 301 ntBASIC11.15□□□□□ -0.62
APOBP04114 INO80E-210ENST00000567705 880 ntTSL 3 BASIC11.15□□□□□ -0.62
APOBP04114 MYLKP1-201ENST00000509077 1580 ntBASIC11.15□□□□□ -0.62
APOBP04114 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
APOBP04114 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
APOBP04114 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
APOBP04114 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC11.14□□□□□ -0.63
APOBP04114 PGM5P2-202ENST00000637225 1043 ntBASIC11.14□□□□□ -0.63
APOBP04114 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC11.14□□□□□ -0.63
APOBP04114 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
APOBP04114 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
APOBP04114 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
APOBP04114 AL008721.1-201ENST00000609964 604 ntBASIC11.14□□□□□ -0.63
APOBP04114 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC11.14□□□□□ -0.63
APOBP04114 AFG3L1P-217ENST00000557444 2447 ntBASIC11.14□□□□□ -0.63
APOBP04114 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC11.14□□□□□ -0.63
APOBP04114 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC11.14□□□□□ -0.63
APOBP04114 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
APOBP04114 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC11.14□□□□□ -0.63
APOBP04114 RN7SL204P-201ENST00000582831 262 ntBASIC11.14□□□□□ -0.63
APOBP04114 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC11.14□□□□□ -0.63
APOBP04114 YTHDF3-AS1-201ENST00000603538 718 ntBASIC11.14□□□□□ -0.63
APOBP04114 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
APOBP04114 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
APOBP04114 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 STK25P1-201ENST00000585406 838 ntBASIC11.13□□□□□ -0.63
APOBP04114 AC004835.2-201ENST00000603762 682 ntBASIC11.13□□□□□ -0.63
APOBP04114 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
APOBP04114 AC025580.3-201ENST00000617932 1424 ntBASIC11.13□□□□□ -0.63
APOBP04114 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 AC236430.1-201ENST00000402231 743 ntBASIC11.13□□□□□ -0.63
APOBP04114 RAC2-204ENST00000406508 893 ntTSL 5 BASIC11.13□□□□□ -0.63
APOBP04114 GPS2P2-201ENST00000430745 888 ntBASIC11.13□□□□□ -0.63
APOBP04114 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC11.13□□□□□ -0.63
APOBP04114 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 TAF8-206ENST00000472818 719 ntTSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
APOBP04114 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC11.13□□□□□ -0.63
APOBP04114 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC11.13□□□□□ -0.63
APOBP04114 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC11.13□□□□□ -0.63
APOBP04114 AC092919.2-201ENST00000623631 1645 ntBASIC11.13□□□□□ -0.63
APOBP04114 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
APOBP04114 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
APOBP04114 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC11.13□□□□□ -0.63
APOBP04114 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms