Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.85■□□□□ 0.93
CTDNEP1O95476 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.84■□□□□ 0.93
CTDNEP1O95476 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.84■□□□□ 0.93
CTDNEP1O95476 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.84■□□□□ 0.93
CTDNEP1O95476 GPR32P1-201ENST00000601788 811 ntBASIC20.84■□□□□ 0.93
CTDNEP1O95476 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CTDNEP1O95476 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTDNEP1O95476 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.83■□□□□ 0.93
CTDNEP1O95476 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
CTDNEP1O95476 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTDNEP1O95476 AL671277.2-201ENST00000458060 996 ntBASIC20.83■□□□□ 0.93
CTDNEP1O95476 AC068472.1-201ENST00000474589 881 ntBASIC20.83■□□□□ 0.93
CTDNEP1O95476 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.83■□□□□ 0.93
CTDNEP1O95476 KRT18P21-201ENST00000515767 1272 ntBASIC20.83■□□□□ 0.93
CTDNEP1O95476 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.83■□□□□ 0.93
CTDNEP1O95476 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.83■□□□□ 0.93
CTDNEP1O95476 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.83■□□□□ 0.93
CTDNEP1O95476 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTDNEP1O95476 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CTDNEP1O95476 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CTDNEP1O95476 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.83■□□□□ 0.92
CTDNEP1O95476 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.83■□□□□ 0.92
CTDNEP1O95476 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTDNEP1O95476 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 LINC00304-203ENST00000565008 1864 ntBASIC20.82■□□□□ 0.92
CTDNEP1O95476 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 TSPY12P-201ENST00000421279 868 ntBASIC20.82■□□□□ 0.92
CTDNEP1O95476 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.82■□□□□ 0.92
CTDNEP1O95476 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 AC112698.1-201ENST00000510299 916 ntBASIC20.82■□□□□ 0.92
CTDNEP1O95476 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.82■□□□□ 0.92
CTDNEP1O95476 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTDNEP1O95476 Z83836.1-201ENST00000624605 1642 ntBASIC20.82■□□□□ 0.92
CTDNEP1O95476 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.81■□□□□ 0.92
CTDNEP1O95476 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTDNEP1O95476 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms