Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SSX4O60224 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.36■□□□□ 0.21
SSX4O60224 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.36■□□□□ 0.21
SSX4O60224 SDHAP1-207ENST00000440850 2000 ntBASIC16.36■□□□□ 0.21
SSX4O60224 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.36■□□□□ 0.21
SSX4O60224 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.36■□□□□ 0.21
SSX4O60224 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.36■□□□□ 0.21
SSX4O60224 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.36■□□□□ 0.21
SSX4O60224 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.36■□□□□ 0.21
SSX4O60224 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 AC091390.4-202ENST00000476426 537 ntBASIC16.36■□□□□ 0.21
SSX4O60224 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.36■□□□□ 0.21
SSX4O60224 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.36■□□□□ 0.21
SSX4O60224 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
SSX4O60224 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
SSX4O60224 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SSX4O60224 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.36■□□□□ 0.21
SSX4O60224 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SSX4O60224 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SSX4O60224 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
SSX4O60224 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.35■□□□□ 0.21
SSX4O60224 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
SSX4O60224 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
SSX4O60224 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX4O60224 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.35■□□□□ 0.21
SSX4O60224 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.35■□□□□ 0.21
SSX4O60224 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.35■□□□□ 0.21
SSX4O60224 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
SSX4O60224 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
SSX4O60224 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX4O60224 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SSX4O60224 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.35■□□□□ 0.21
SSX4O60224 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SSX4O60224 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.35■□□□□ 0.21
SSX4O60224 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX4O60224 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.35■□□□□ 0.21
SSX4O60224 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SSX4O60224 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.34■□□□□ 0.21
SSX4O60224 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 SLC25A1P2-201ENST00000430693 912 ntBASIC16.34■□□□□ 0.21
SSX4O60224 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.34■□□□□ 0.21
SSX4O60224 AC022616.7-201ENST00000525383 220 ntBASIC16.34■□□□□ 0.21
SSX4O60224 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.34■□□□□ 0.21
SSX4O60224 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.34■□□□□ 0.21
SSX4O60224 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SSX4O60224 AC083906.6-201ENST00000641366 219 ntBASIC16.34■□□□□ 0.21
SSX4O60224 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SSX4O60224 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.34■□□□□ 0.21
SSX4O60224 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
SSX4O60224 AC096733.2-201ENST00000609937 1394 ntBASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms