Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMD1Q9UGP4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMD1Q9UGP4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
LIMD1Q9UGP4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIMD1Q9UGP4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 HEIH-201ENST00000623091 1652 ntBASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 MTCL1P1-201ENST00000446207 792 ntBASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMD1Q9UGP4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 KRT18P41-201ENST00000518924 1277 ntBASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 AC025062.2-201ENST00000605477 670 ntBASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 AC008735.5-201ENST00000623544 497 ntBASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMD1Q9UGP4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC141586.3-201ENST00000562166 1838 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 MIR149-201ENST00000384879 89 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC007967.2-201ENST00000432613 625 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 RNA5SP416-201ENST00000516838 111 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 UNC93B6-202ENST00000528242 690 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms