Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 AF186192.3-201ENST00000583427 947 ntBASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 MIR6786-201ENST00000616843 113 ntBASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 REXO1L9P-201ENST00000604264 2108 ntBASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 AC141586.5-201ENST00000624546 2050 ntBASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 AC008556.1-201ENST00000610908 2040 ntBASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CHMP1AQ9HD42 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AC008040.2-201ENST00000461049 708 ntBASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AC130371.2-201ENST00000619443 611 ntBASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AC093677.2-201ENST00000600169 1863 ntBASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AL109659.2-201ENST00000606809 1674 ntBASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CHMP1AQ9HD42 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CHMP1AQ9HD42 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms