Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 KRT18P22-201ENST00000402024 1347 ntBASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
UPF3BQ9BZI7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AL512604.3-201ENST00000569583 964 ntBASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AC145285.6-201ENST00000604632 637 ntBASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AL138966.2-201ENST00000621997 464 ntBASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AC141257.4-201ENST00000634557 245 ntBASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AC136944.6-201ENST00000634818 245 ntBASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.52■■□□□ 1.04
UPF3BQ9BZI7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
UPF3BQ9BZI7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
UPF3BQ9BZI7 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
UPF3BQ9BZI7 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.52■■□□□ 1.03
UPF3BQ9BZI7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 GCSHP2-201ENST00000560971 527 ntBASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 AL023973.1-201ENST00000624619 620 ntBASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPF3BQ9BZI7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 AC010203.1-204ENST00000548782 407 ntBASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
UPF3BQ9BZI7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms