Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 AL512343.1-201ENST00000605837 169 ntBASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL25A1Q9BXS0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.08■□□□□ 0.49
COL25A1Q9BXS0 DGCR5-201ENST00000399539 862 ntBASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 RN7SL589P-201ENST00000481268 310 ntBASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC244093.1-201ENST00000610837 814 ntBASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL25A1Q9BXS0 AC007541.1-201ENST00000570282 1469 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 PTCHD3P3-201ENST00000403073 906 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 TSSK5P-201ENST00000423978 907 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 GOLGA2P4-201ENST00000441462 777 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AP005482.1-201ENST00000563722 1273 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AC019129.2-201ENST00000609837 1235 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AL590560.3-201ENST00000623350 461 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AL109936.8-201ENST00000641772 604 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 LINC00602-201ENST00000629776 2065 ntBASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.07■□□□□ 0.48
COL25A1Q9BXS0 AC100757.3-201ENST00000622361 1406 ntBASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 AC112698.1-201ENST00000510299 916 ntBASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 MIR6080-201ENST00000617359 66 ntBASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL25A1Q9BXS0 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms