Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.62■□□□□ 0.89
USP28Q96RU2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 KRT18P22-201ENST00000402024 1347 ntBASIC20.62■□□□□ 0.89
USP28Q96RU2 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.62■□□□□ 0.89
USP28Q96RU2 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.62■□□□□ 0.89
USP28Q96RU2 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
USP28Q96RU2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP28Q96RU2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.62■□□□□ 0.89
USP28Q96RU2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP28Q96RU2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP28Q96RU2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.61■□□□□ 0.89
USP28Q96RU2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.61■□□□□ 0.89
USP28Q96RU2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.61■□□□□ 0.89
USP28Q96RU2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
USP28Q96RU2 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 AC087499.1-201ENST00000418141 1075 ntBASIC20.61■□□□□ 0.89
USP28Q96RU2 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
USP28Q96RU2 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.61■□□□□ 0.89
USP28Q96RU2 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.61■□□□□ 0.89
USP28Q96RU2 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
USP28Q96RU2 AC145285.6-201ENST00000604632 637 ntBASIC20.61■□□□□ 0.89
USP28Q96RU2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.61■□□□□ 0.89
USP28Q96RU2 AC012313.1-201ENST00000593393 3059 ntBASIC20.61■□□□□ 0.89
USP28Q96RU2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.61■□□□□ 0.89
USP28Q96RU2 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP28Q96RU2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
USP28Q96RU2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.6■□□□□ 0.89
USP28Q96RU2 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP28Q96RU2 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.6■□□□□ 0.89
USP28Q96RU2 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.6■□□□□ 0.89
USP28Q96RU2 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.6■□□□□ 0.89
USP28Q96RU2 AL023973.1-201ENST00000624619 620 ntBASIC20.6■□□□□ 0.89
USP28Q96RU2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.6■□□□□ 0.89
USP28Q96RU2 AC080080.1-201ENST00000625121 2420 ntBASIC20.6■□□□□ 0.89
USP28Q96RU2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.6■□□□□ 0.89
USP28Q96RU2 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP28Q96RU2 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.59■□□□□ 0.89
USP28Q96RU2 AC106820.2-201ENST00000563775 3264 ntBASIC20.59■□□□□ 0.89
USP28Q96RU2 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms