Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.57■□□□□ 0.4
CFAP54Q96N23 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 U91328.1-201ENST00000437528 223 ntBASIC17.57■□□□□ 0.4
CFAP54Q96N23 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 RCC2P3-201ENST00000418112 1537 ntBASIC17.57■□□□□ 0.4
CFAP54Q96N23 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 MIR1909-201ENST00000411312 80 ntBASIC17.57■□□□□ 0.4
CFAP54Q96N23 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 AC010336.2-201ENST00000564226 506 ntBASIC17.57■□□□□ 0.4
CFAP54Q96N23 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.57■□□□□ 0.4
CFAP54Q96N23 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CFAP54Q96N23 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 FP475955.4-201ENST00000623131 1990 ntBASIC17.56■□□□□ 0.4
CFAP54Q96N23 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CFAP54Q96N23 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.56■□□□□ 0.4
CFAP54Q96N23 LINC02560-201ENST00000596379 459 ntBASIC17.56■□□□□ 0.4
CFAP54Q96N23 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.55■□□□□ 0.4
CFAP54Q96N23 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CFAP54Q96N23 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.55■□□□□ 0.4
CFAP54Q96N23 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CFAP54Q96N23 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CFAP54Q96N23 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.54■□□□□ 0.4
CFAP54Q96N23 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CFAP54Q96N23 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.54■□□□□ 0.4
CFAP54Q96N23 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.54■□□□□ 0.4
CFAP54Q96N23 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.54■□□□□ 0.4
CFAP54Q96N23 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.54■□□□□ 0.4
CFAP54Q96N23 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CFAP54Q96N23 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CFAP54Q96N23 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CFAP54Q96N23 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms