Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 AP001005.1-201ENST00000571755 1248 ntBASIC21.31■■□□□ 1
NKX2-3Q8TAU0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX2-3Q8TAU0 IL9RP2-201ENST00000423948 1312 ntBASIC21.3■■□□□ 1
NKX2-3Q8TAU0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 AC138894.3-201ENST00000603787 634 ntBASIC21.3■■□□□ 1
NKX2-3Q8TAU0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 AL390961.4-201ENST00000623958 2535 ntBASIC21.3■■□□□ 1
NKX2-3Q8TAU0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX2-3Q8TAU0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 TSPY12P-201ENST00000421279 868 ntBASIC21.29■■□□□ 1
NKX2-3Q8TAU0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 AC090616.6-201ENST00000582640 721 ntBASIC21.29■■□□□ 1
NKX2-3Q8TAU0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 AC124864.1-201ENST00000623408 392 ntBASIC21.29■■□□□ 1
NKX2-3Q8TAU0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.29■■□□□ 1
NKX2-3Q8TAU0 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 KRT8P47-201ENST00000604727 1398 ntBASIC21.28■■□□□ 1
NKX2-3Q8TAU0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.28■■□□□ 1
NKX2-3Q8TAU0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms