Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 AC122714.2-201ENST00000502787 707 ntBASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
VPS13DQ5THJ4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AL390955.2-201ENST00000603032 514 ntBASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AC093010.1-201ENST00000473625 1624 ntBASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AL645939.2-201ENST00000427340 991 ntBASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 PRSS29P-201ENST00000440800 595 ntBASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 AC109322.1-201ENST00000524499 1264 ntBASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
VPS13DQ5THJ4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 AL031598.1-201ENST00000561511 1773 ntBASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 ADH5P3-201ENST00000433842 1137 ntBASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 ESPNP-201ENST00000270691 2015 ntBASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
VPS13DQ5THJ4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
VPS13DQ5THJ4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms