Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 AC096633.1-201ENST00000422446 749 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 AC002472.2-201ENST00000442739 958 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 MEIS3P1-201ENST00000495167 958 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 MIR4751-201ENST00000578027 74 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 AC005034.1-201ENST00000426657 489 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 AC010654.1-201ENST00000615722 808 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 NCF1C-201ENST00000438382 1427 ntBASIC18.98■□□□□ 0.63
CHD9Q3L8U1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 AC004461.1-201ENST00000412461 403 ntBASIC18.98■□□□□ 0.63
CHD9Q3L8U1 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHD9Q3L8U1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 PGM5P2-202ENST00000637225 1043 ntBASIC18.97■□□□□ 0.63
CHD9Q3L8U1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 KRT8P47-201ENST00000604727 1398 ntBASIC18.97■□□□□ 0.63
CHD9Q3L8U1 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 RN7SL204P-201ENST00000582831 262 ntBASIC18.97■□□□□ 0.63
CHD9Q3L8U1 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CHD9Q3L8U1 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 AC063926.2-201ENST00000623766 1308 ntBASIC18.96■□□□□ 0.63
CHD9Q3L8U1 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 AL049757.1-201ENST00000616842 1596 ntBASIC18.96■□□□□ 0.63
CHD9Q3L8U1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHD9Q3L8U1 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms