Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.58■□□□□ 0.4
YBX1P67809 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.58■□□□□ 0.4
YBX1P67809 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
YBX1P67809 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.58■□□□□ 0.4
YBX1P67809 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 GNAS-203ENST00000306120 1878 ntBASIC17.57■□□□□ 0.4
YBX1P67809 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.57■□□□□ 0.4
YBX1P67809 AC009053.2-201ENST00000563701 2365 ntBASIC17.57■□□□□ 0.4
YBX1P67809 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
YBX1P67809 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.57■□□□□ 0.4
YBX1P67809 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.57■□□□□ 0.4
YBX1P67809 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.57■□□□□ 0.4
YBX1P67809 AC009065.1-201ENST00000564055 1225 ntBASIC17.57■□□□□ 0.4
YBX1P67809 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.57■□□□□ 0.4
YBX1P67809 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 AL358472.4-201ENST00000633140 710 ntBASIC17.57■□□□□ 0.4
YBX1P67809 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.57■□□□□ 0.4
YBX1P67809 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.57■□□□□ 0.4
YBX1P67809 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
YBX1P67809 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
YBX1P67809 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.56■□□□□ 0.4
YBX1P67809 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
YBX1P67809 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.56■□□□□ 0.4
YBX1P67809 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.56■□□□□ 0.4
YBX1P67809 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.56■□□□□ 0.4
YBX1P67809 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.56■□□□□ 0.4
YBX1P67809 AL136038.3-201ENST00000561909 1096 ntBASIC17.56■□□□□ 0.4
YBX1P67809 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.56■□□□□ 0.4
YBX1P67809 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.56■□□□□ 0.4
YBX1P67809 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 AL121956.5-201ENST00000625261 221 ntBASIC17.56■□□□□ 0.4
YBX1P67809 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
YBX1P67809 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
YBX1P67809 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.56■□□□□ 0.4
YBX1P67809 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.56■□□□□ 0.4
YBX1P67809 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
YBX1P67809 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
YBX1P67809 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
YBX1P67809 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
YBX1P67809 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.55■□□□□ 0.4
YBX1P67809 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.55■□□□□ 0.4
YBX1P67809 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
YBX1P67809 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
YBX1P67809 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
YBX1P67809 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.55■□□□□ 0.4
YBX1P67809 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms