Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.12■□□□□ 0.33
LIM2P55344 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
LIM2P55344 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.12■□□□□ 0.33
LIM2P55344 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LIM2P55344 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.12■□□□□ 0.33
LIM2P55344 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIM2P55344 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 Z83836.1-201ENST00000624605 1642 ntBASIC17.11■□□□□ 0.33
LIM2P55344 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LIM2P55344 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.11■□□□□ 0.33
LIM2P55344 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.11■□□□□ 0.33
LIM2P55344 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.11■□□□□ 0.33
LIM2P55344 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.11■□□□□ 0.33
LIM2P55344 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.11■□□□□ 0.33
LIM2P55344 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.11■□□□□ 0.33
LIM2P55344 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.11■□□□□ 0.33
LIM2P55344 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.11■□□□□ 0.33
LIM2P55344 AL390719.2-201ENST00000606993 987 ntBASIC17.11■□□□□ 0.33
LIM2P55344 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.11■□□□□ 0.33
LIM2P55344 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
LIM2P55344 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.11■□□□□ 0.33
LIM2P55344 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIM2P55344 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LIM2P55344 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIM2P55344 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 PCED1CP-201ENST00000419887 785 ntBASIC17.1■□□□□ 0.33
LIM2P55344 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.1■□□□□ 0.33
LIM2P55344 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 AL353692.3-201ENST00000407031 1396 ntBASIC17.1■□□□□ 0.33
LIM2P55344 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.1■□□□□ 0.33
LIM2P55344 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.1■□□□□ 0.33
LIM2P55344 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIM2P55344 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.09■□□□□ 0.33
LIM2P55344 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms