Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.47■□□□□ 0.39
FOXA1P55317 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
FOXA1P55317 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 NAPSB-206ENST00000562112 1266 ntBASIC17.47■□□□□ 0.39
FOXA1P55317 MIR3917-201ENST00000580971 93 ntBASIC17.47■□□□□ 0.39
FOXA1P55317 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
FOXA1P55317 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.47■□□□□ 0.39
FOXA1P55317 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXA1P55317 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXA1P55317 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
FOXA1P55317 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.46■□□□□ 0.39
FOXA1P55317 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.46■□□□□ 0.39
FOXA1P55317 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.46■□□□□ 0.39
FOXA1P55317 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.46■□□□□ 0.39
FOXA1P55317 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.46■□□□□ 0.39
FOXA1P55317 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXA1P55317 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
FOXA1P55317 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
FOXA1P55317 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXA1P55317 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
FOXA1P55317 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
FOXA1P55317 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
FOXA1P55317 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
FOXA1P55317 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 AC009053.2-201ENST00000563701 2365 ntBASIC17.45■□□□□ 0.38
FOXA1P55317 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXA1P55317 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 MMP23A-201ENST00000234610 1017 ntBASIC17.45■□□□□ 0.38
FOXA1P55317 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXA1P55317 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXA1P55317 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
FOXA1P55317 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.45■□□□□ 0.38
FOXA1P55317 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.45■□□□□ 0.38
FOXA1P55317 AL157888.1-201ENST00000631930 593 ntBASIC17.45■□□□□ 0.38
FOXA1P55317 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
FOXA1P55317 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
FOXA1P55317 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXA1P55317 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXA1P55317 SIRPAP1-201ENST00000448467 1770 ntBASIC17.45■□□□□ 0.38
FOXA1P55317 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXA1P55317 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
FOXA1P55317 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
FOXA1P55317 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
FOXA1P55317 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms