Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 YBX2P1-201ENST00000394192 760 ntBASIC20.73■□□□□ 0.91
HMGCS2P54868 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.73■□□□□ 0.91
HMGCS2P54868 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.73■□□□□ 0.91
HMGCS2P54868 AC096633.1-201ENST00000422446 749 ntBASIC20.73■□□□□ 0.91
HMGCS2P54868 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGCS2P54868 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGCS2P54868 AC009947.1-201ENST00000444350 727 ntBASIC20.73■□□□□ 0.91
HMGCS2P54868 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.73■□□□□ 0.91
HMGCS2P54868 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.73■□□□□ 0.91
HMGCS2P54868 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HMGCS2P54868 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCS2P54868 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCS2P54868 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCS2P54868 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.72■□□□□ 0.91
HMGCS2P54868 RNA5SP416-201ENST00000516838 111 ntBASIC20.72■□□□□ 0.91
HMGCS2P54868 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 AC040169.1-201ENST00000565382 521 ntBASIC20.72■□□□□ 0.91
HMGCS2P54868 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
HMGCS2P54868 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
HMGCS2P54868 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCS2P54868 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HMGCS2P54868 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCS2P54868 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 KRT8P47-201ENST00000604727 1398 ntBASIC20.72■□□□□ 0.91
HMGCS2P54868 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCS2P54868 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCS2P54868 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGCS2P54868 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
HMGCS2P54868 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
HMGCS2P54868 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGCS2P54868 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGCS2P54868 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 AD001527.2-201ENST00000622994 785 ntBASIC20.71■□□□□ 0.91
HMGCS2P54868 AC073592.4-201ENST00000623827 446 ntBASIC20.71■□□□□ 0.91
HMGCS2P54868 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
HMGCS2P54868 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCS2P54868 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
HMGCS2P54868 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HMGCS2P54868 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.7■□□□□ 0.91
HMGCS2P54868 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HMGCS2P54868 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HMGCS2P54868 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.7■□□□□ 0.9
HMGCS2P54868 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HMGCS2P54868 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HMGCS2P54868 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
HMGCS2P54868 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGCS2P54868 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGCS2P54868 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.7■□□□□ 0.9
HMGCS2P54868 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 AC112482.1-201ENST00000492080 688 ntBASIC20.7■□□□□ 0.9
HMGCS2P54868 AC122714.2-201ENST00000502787 707 ntBASIC20.7■□□□□ 0.9
HMGCS2P54868 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
HMGCS2P54868 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGCS2P54868 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.7■□□□□ 0.9
HMGCS2P54868 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.7■□□□□ 0.9
HMGCS2P54868 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCS2P54868 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms