Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.99■□□□□ 0.31
SOX3P41225 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.99■□□□□ 0.31
SOX3P41225 AL645929.1-201ENST00000420084 975 ntBASIC16.99■□□□□ 0.31
SOX3P41225 HLA-F-220ENST00000434407 884 ntBASIC16.99■□□□□ 0.31
SOX3P41225 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.99■□□□□ 0.31
SOX3P41225 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
SOX3P41225 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SOX3P41225 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.99■□□□□ 0.31
SOX3P41225 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SOX3P41225 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX3P41225 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.99■□□□□ 0.31
SOX3P41225 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SOX3P41225 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
SOX3P41225 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.99■□□□□ 0.31
SOX3P41225 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 AL499627.1-201ENST00000569373 2188 ntBASIC16.98■□□□□ 0.31
SOX3P41225 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
SOX3P41225 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SOX3P41225 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.98■□□□□ 0.31
SOX3P41225 AC009065.1-201ENST00000564055 1225 ntBASIC16.98■□□□□ 0.31
SOX3P41225 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.98■□□□□ 0.31
SOX3P41225 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.98■□□□□ 0.31
SOX3P41225 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SOX3P41225 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SOX3P41225 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.98■□□□□ 0.31
SOX3P41225 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SOX3P41225 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX3P41225 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
SOX3P41225 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.97■□□□□ 0.31
SOX3P41225 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.97■□□□□ 0.31
SOX3P41225 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 PVRIG2P-201ENST00000435460 978 ntBASIC16.97■□□□□ 0.31
SOX3P41225 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX3P41225 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.97■□□□□ 0.31
SOX3P41225 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.97■□□□□ 0.31
SOX3P41225 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX3P41225 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SOX3P41225 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX3P41225 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX3P41225 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX3P41225 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.96■□□□□ 0.31
SOX3P41225 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 AL163051.1-201ENST00000569214 1512 ntBASIC16.96■□□□□ 0.31
SOX3P41225 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms