Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
RFX1P22670 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.64■□□□□ 0.73
RFX1P22670 AL645929.1-201ENST00000420084 975 ntBASIC19.64■□□□□ 0.73
RFX1P22670 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.64■□□□□ 0.73
RFX1P22670 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.64■□□□□ 0.73
RFX1P22670 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
RFX1P22670 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.64■□□□□ 0.73
RFX1P22670 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.64■□□□□ 0.73
RFX1P22670 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.64■□□□□ 0.73
RFX1P22670 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RFX1P22670 AC018470.1-201ENST00000624790 3129 ntBASIC19.63■□□□□ 0.73
RFX1P22670 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RFX1P22670 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RFX1P22670 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.63■□□□□ 0.73
RFX1P22670 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RFX1P22670 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 FAAHP1-202ENST00000446499 1238 ntBASIC19.63■□□□□ 0.73
RFX1P22670 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.63■□□□□ 0.73
RFX1P22670 MIR3917-201ENST00000580971 93 ntBASIC19.63■□□□□ 0.73
RFX1P22670 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFX1P22670 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.63■□□□□ 0.73
RFX1P22670 GNAS-203ENST00000306120 1878 ntBASIC19.62■□□□□ 0.73
RFX1P22670 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RFX1P22670 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.62■□□□□ 0.73
RFX1P22670 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.62■□□□□ 0.73
RFX1P22670 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 KRT8P10-201ENST00000450021 1447 ntBASIC19.62■□□□□ 0.73
RFX1P22670 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX1P22670 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RFX1P22670 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.62■□□□□ 0.73
RFX1P22670 BX276092.5-203ENST00000456199 560 ntBASIC19.62■□□□□ 0.73
RFX1P22670 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX1P22670 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.62■□□□□ 0.73
RFX1P22670 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.62■□□□□ 0.73
RFX1P22670 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 AC024243.1-201ENST00000609234 778 ntBASIC19.62■□□□□ 0.73
RFX1P22670 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RFX1P22670 AL133373.2-201ENST00000623187 2828 ntBASIC19.62■□□□□ 0.73
RFX1P22670 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.62■□□□□ 0.73
RFX1P22670 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFX1P22670 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
RFX1P22670 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX1P22670 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.61■□□□□ 0.73
RFX1P22670 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX1P22670 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.61■□□□□ 0.73
RFX1P22670 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.61■□□□□ 0.73
RFX1P22670 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.61■□□□□ 0.73
RFX1P22670 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.61■□□□□ 0.73
RFX1P22670 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RFX1P22670 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX1P22670 SPDYE15P-201ENST00000424157 909 ntBASIC19.61■□□□□ 0.73
RFX1P22670 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RFX1P22670 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.61■□□□□ 0.73
RFX1P22670 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.61■□□□□ 0.73
RFX1P22670 AC034232.1-201ENST00000506026 1064 ntBASIC19.61■□□□□ 0.73
RFX1P22670 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.61■□□□□ 0.73
RFX1P22670 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RFX1P22670 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RFX1P22670 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
RFX1P22670 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RFX1P22670 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RFX1P22670 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms