Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC23.73■■□□□ 1.39
COL3A1P02461 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
COL3A1P02461 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.73■■□□□ 1.39
COL3A1P02461 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.73■■□□□ 1.39
COL3A1P02461 AC026396.1-201ENST00000419388 421 ntBASIC23.73■■□□□ 1.39
COL3A1P02461 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC23.73■■□□□ 1.39
COL3A1P02461 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
COL3A1P02461 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.73■■□□□ 1.39
COL3A1P02461 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC23.73■■□□□ 1.39
COL3A1P02461 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC23.73■■□□□ 1.39
COL3A1P02461 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL3A1P02461 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
COL3A1P02461 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.72■■□□□ 1.39
COL3A1P02461 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.72■■□□□ 1.39
COL3A1P02461 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.72■■□□□ 1.39
COL3A1P02461 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 CYGB-205ENST00000590175 830 ntTSL 3 BASIC23.72■■□□□ 1.39
COL3A1P02461 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.72■■□□□ 1.39
COL3A1P02461 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC23.72■■□□□ 1.39
COL3A1P02461 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL3A1P02461 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC23.71■■□□□ 1.39
COL3A1P02461 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC23.71■■□□□ 1.39
COL3A1P02461 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC23.71■■□□□ 1.39
COL3A1P02461 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
COL3A1P02461 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 AC132008.2-207ENST00000454517 770 ntBASIC23.71■■□□□ 1.39
COL3A1P02461 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.71■■□□□ 1.39
COL3A1P02461 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC23.71■■□□□ 1.39
COL3A1P02461 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.71■■□□□ 1.39
COL3A1P02461 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC23.71■■□□□ 1.39
COL3A1P02461 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.71■■□□□ 1.39
COL3A1P02461 AP000867.4-201ENST00000641616 219 ntBASIC23.71■■□□□ 1.39
COL3A1P02461 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC23.71■■□□□ 1.39
COL3A1P02461 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
COL3A1P02461 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 AL353593.2-201ENST00000602529 1483 ntBASIC23.71■■□□□ 1.39
COL3A1P02461 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC23.71■■□□□ 1.39
COL3A1P02461 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL3A1P02461 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
COL3A1P02461 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC23.71■■□□□ 1.39
COL3A1P02461 AP005117.1-201ENST00000584346 1413 ntBASIC23.71■■□□□ 1.39
COL3A1P02461 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL3A1P02461 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
COL3A1P02461 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC23.7■■□□□ 1.39
COL3A1P02461 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
COL3A1P02461 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL3A1P02461 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL3A1P02461 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC23.7■■□□□ 1.38
COL3A1P02461 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
COL3A1P02461 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
COL3A1P02461 SART3-203ENST00000546611 1184 ntBASIC23.7■■□□□ 1.38
COL3A1P02461 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC23.7■■□□□ 1.38
COL3A1P02461 MNT-208ENST00000575394 606 ntTSL 4 BASIC23.7■■□□□ 1.38
COL3A1P02461 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
COL3A1P02461 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.7■■□□□ 1.38
COL3A1P02461 AC073592.4-201ENST00000623827 446 ntBASIC23.7■■□□□ 1.38
COL3A1P02461 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23.7■■□□□ 1.38
COL3A1P02461 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
COL3A1P02461 PMPCAP1-201ENST00000508114 1576 ntBASIC23.7■■□□□ 1.38
COL3A1P02461 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC23.7■■□□□ 1.38
COL3A1P02461 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL3A1P02461 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
COL3A1P02461 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL3A1P02461 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC23.7■■□□□ 1.38
COL3A1P02461 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.7■■□□□ 1.38
COL3A1P02461 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms