Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TNFP01375 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TNFP01375 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TNFP01375 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TNFP01375 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 RBM17P3-201ENST00000417687 1192 ntBASIC17.56■□□□□ 0.4
TNFP01375 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.56■□□□□ 0.4
TNFP01375 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.56■□□□□ 0.4
TNFP01375 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
TNFP01375 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 AL355877.3-201ENST00000622820 899 ntBASIC17.56■□□□□ 0.4
TNFP01375 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TNFP01375 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TNFP01375 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.56■□□□□ 0.4
TNFP01375 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.56■□□□□ 0.4
TNFP01375 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 AC020763.4-201ENST00000623414 4170 ntBASIC17.56■□□□□ 0.4
TNFP01375 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TNFP01375 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.56■□□□□ 0.4
TNFP01375 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.55■□□□□ 0.4
TNFP01375 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TNFP01375 WIZP1-201ENST00000531444 2299 ntBASIC17.55■□□□□ 0.4
TNFP01375 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TNFP01375 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 AF186996.4-201ENST00000467186 377 ntBASIC17.55■□□□□ 0.4
TNFP01375 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.55■□□□□ 0.4
TNFP01375 DUTP2-201ENST00000519164 463 ntBASIC17.55■□□□□ 0.4
TNFP01375 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.55■□□□□ 0.4
TNFP01375 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.55■□□□□ 0.4
TNFP01375 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 TP73-AS1-207ENST00000624167 988 ntBASIC17.55■□□□□ 0.4
TNFP01375 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.55■□□□□ 0.4
TNFP01375 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TNFP01375 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.54■□□□□ 0.4
TNFP01375 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
TNFP01375 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms