Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB3O75112 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LDB3O75112 AC138028.4-201ENST00000564984 1845 ntBASIC16.98■□□□□ 0.31
LDB3O75112 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB3O75112 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB3O75112 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB3O75112 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB3O75112 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LDB3O75112 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.98■□□□□ 0.31
LDB3O75112 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LDB3O75112 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LDB3O75112 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.97■□□□□ 0.31
LDB3O75112 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LDB3O75112 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
LDB3O75112 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
LDB3O75112 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.97■□□□□ 0.31
LDB3O75112 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.97■□□□□ 0.31
LDB3O75112 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LDB3O75112 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LDB3O75112 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.96■□□□□ 0.31
LDB3O75112 TSPY12P-201ENST00000421279 868 ntBASIC16.96■□□□□ 0.31
LDB3O75112 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB3O75112 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.96■□□□□ 0.31
LDB3O75112 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB3O75112 AC091076.1-201ENST00000610741 619 ntBASIC16.96■□□□□ 0.31
LDB3O75112 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB3O75112 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LDB3O75112 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
LDB3O75112 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB3O75112 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.96■□□□□ 0.31
LDB3O75112 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LDB3O75112 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.96■□□□□ 0.31
LDB3O75112 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LDB3O75112 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LDB3O75112 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.96■□□□□ 0.3
LDB3O75112 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LDB3O75112 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LDB3O75112 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms