Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC22.6■■□□□ 1.21
CACNA1FO60840 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC22.6■■□□□ 1.21
CACNA1FO60840 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC22.6■■□□□ 1.21
CACNA1FO60840 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
CACNA1FO60840 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC22.6■■□□□ 1.21
CACNA1FO60840 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 AC018712.1-201ENST00000455767 687 ntBASIC22.6■■□□□ 1.21
CACNA1FO60840 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.6■■□□□ 1.21
CACNA1FO60840 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC22.6■■□□□ 1.21
CACNA1FO60840 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC22.6■■□□□ 1.21
CACNA1FO60840 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 AC008764.6-201ENST00000595909 2069 ntBASIC22.6■■□□□ 1.21
CACNA1FO60840 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC22.6■■□□□ 1.21
CACNA1FO60840 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC22.6■■□□□ 1.21
CACNA1FO60840 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1FO60840 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC22.6■■□□□ 1.21
CACNA1FO60840 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
CACNA1FO60840 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC22.59■■□□□ 1.21
CACNA1FO60840 AD001527.2-201ENST00000622994 785 ntBASIC22.59■■□□□ 1.21
CACNA1FO60840 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
CACNA1FO60840 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC22.59■■□□□ 1.21
CACNA1FO60840 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC22.59■■□□□ 1.21
CACNA1FO60840 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
CACNA1FO60840 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1FO60840 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.58■■□□□ 1.21
CACNA1FO60840 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.58■■□□□ 1.21
CACNA1FO60840 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
CACNA1FO60840 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC22.58■■□□□ 1.21
CACNA1FO60840 RBM17P3-201ENST00000417687 1192 ntBASIC22.58■■□□□ 1.21
CACNA1FO60840 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.21
CACNA1FO60840 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC22.58■■□□□ 1.21
CACNA1FO60840 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC22.58■■□□□ 1.21
CACNA1FO60840 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CACNA1FO60840 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CACNA1FO60840 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CACNA1FO60840 NOC2LP1-202ENST00000452600 2235 ntBASIC22.58■■□□□ 1.2
CACNA1FO60840 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CACNA1FO60840 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
CACNA1FO60840 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.58■■□□□ 1.2
CACNA1FO60840 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC22.58■■□□□ 1.2
CACNA1FO60840 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CACNA1FO60840 AC019129.2-201ENST00000609837 1235 ntBASIC22.58■■□□□ 1.2
CACNA1FO60840 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.2
CACNA1FO60840 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1FO60840 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC22.57■■□□□ 1.2
CACNA1FO60840 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1FO60840 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CACNA1FO60840 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1FO60840 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC22.57■■□□□ 1.2
CACNA1FO60840 AC148477.5-201ENST00000625164 1645 ntBASIC22.57■■□□□ 1.2
CACNA1FO60840 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC22.57■■□□□ 1.2
CACNA1FO60840 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 HARS-201ENST00000307633 1780 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1FO60840 THAP5-204ENST00000438865 868 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC22.57■■□□□ 1.2
CACNA1FO60840 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC22.57■■□□□ 1.2
CACNA1FO60840 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1FO60840 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CACNA1FO60840 PMPCAP1-201ENST00000508114 1576 ntBASIC22.57■■□□□ 1.2
CACNA1FO60840 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1FO60840 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC22.56■■□□□ 1.2
CACNA1FO60840 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC22.56■■□□□ 1.2
CACNA1FO60840 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC22.56■■□□□ 1.2
CACNA1FO60840 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC22.56■■□□□ 1.2
CACNA1FO60840 PAM16-208ENST00000573553 722 ntTSL 2 BASIC22.56■■□□□ 1.2
CACNA1FO60840 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms