Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.77■□□□□ 0.44
SNX3O60493 AC060766.5-201ENST00000590539 871 ntBASIC17.77■□□□□ 0.44
SNX3O60493 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SNX3O60493 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SNX3O60493 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SNX3O60493 AC060834.1-201ENST00000443027 2032 ntBASIC17.77■□□□□ 0.43
SNX3O60493 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SNX3O60493 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.77■□□□□ 0.43
SNX3O60493 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SNX3O60493 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SNX3O60493 AL163051.1-201ENST00000569214 1512 ntBASIC17.77■□□□□ 0.43
SNX3O60493 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
SNX3O60493 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.77■□□□□ 0.43
SNX3O60493 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SNX3O60493 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SNX3O60493 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.76■□□□□ 0.43
SNX3O60493 LINC01126-201ENST00000623515 1646 ntBASIC17.76■□□□□ 0.43
SNX3O60493 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SNX3O60493 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SNX3O60493 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 AC004911.1-201ENST00000416316 871 ntBASIC17.76■□□□□ 0.43
SNX3O60493 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.76■□□□□ 0.43
SNX3O60493 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.76■□□□□ 0.43
SNX3O60493 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 AC004264.1-201ENST00000608354 794 ntBASIC17.76■□□□□ 0.43
SNX3O60493 AL050303.2-201ENST00000619798 666 ntBASIC17.76■□□□□ 0.43
SNX3O60493 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.76■□□□□ 0.43
SNX3O60493 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
SNX3O60493 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SNX3O60493 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SNX3O60493 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.76■□□□□ 0.43
SNX3O60493 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
SNX3O60493 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
SNX3O60493 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SNX3O60493 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.75■□□□□ 0.43
SNX3O60493 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SNX3O60493 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 MIR149-201ENST00000384879 89 ntBASIC17.75■□□□□ 0.43
SNX3O60493 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.75■□□□□ 0.43
SNX3O60493 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.75■□□□□ 0.43
SNX3O60493 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
SNX3O60493 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.75■□□□□ 0.43
SNX3O60493 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SNX3O60493 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.74■□□□□ 0.43
SNX3O60493 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.74■□□□□ 0.43
SNX3O60493 DUTP2-201ENST00000519164 463 ntBASIC17.74■□□□□ 0.43
SNX3O60493 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SNX3O60493 SOX15-203ENST00000570788 1093 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms