Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.83■□□□□ 0.28
CACNA1AO00555 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.83■□□□□ 0.28
CACNA1AO00555 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 SPDYE11-202ENST00000450699 704 ntBASIC16.83■□□□□ 0.28
CACNA1AO00555 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.83■□□□□ 0.28
CACNA1AO00555 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.83■□□□□ 0.28
CACNA1AO00555 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CACNA1AO00555 SPDYE9P-201ENST00000570642 692 ntBASIC16.83■□□□□ 0.28
CACNA1AO00555 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CACNA1AO00555 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.83■□□□□ 0.28
CACNA1AO00555 SPDYE10P-202ENST00000612005 668 ntBASIC16.83■□□□□ 0.28
CACNA1AO00555 SPDYE8P-202ENST00000612377 668 ntBASIC16.83■□□□□ 0.28
CACNA1AO00555 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.83■□□□□ 0.28
CACNA1AO00555 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CACNA1AO00555 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.82■□□□□ 0.28
CACNA1AO00555 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CACNA1AO00555 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 LINC00602-201ENST00000629776 2065 ntBASIC16.82■□□□□ 0.28
CACNA1AO00555 AL024508.2-201ENST00000607749 1894 ntBASIC16.82■□□□□ 0.28
CACNA1AO00555 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CACNA1AO00555 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.82■□□□□ 0.28
CACNA1AO00555 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.82■□□□□ 0.28
CACNA1AO00555 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.82■□□□□ 0.28
CACNA1AO00555 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.82■□□□□ 0.28
CACNA1AO00555 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CACNA1AO00555 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
CACNA1AO00555 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.81■□□□□ 0.28
CACNA1AO00555 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.81■□□□□ 0.28
CACNA1AO00555 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 AD001527.2-201ENST00000622994 785 ntBASIC16.81■□□□□ 0.28
CACNA1AO00555 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
CACNA1AO00555 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CACNA1AO00555 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 AC098614.1-201ENST00000368528 745 ntBASIC16.81■□□□□ 0.28
CACNA1AO00555 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.81■□□□□ 0.28
CACNA1AO00555 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.81■□□□□ 0.28
CACNA1AO00555 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.81■□□□□ 0.28
CACNA1AO00555 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CACNA1AO00555 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CACNA1AO00555 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.81■□□□□ 0.28
CACNA1AO00555 FAM86MP-201ENST00000340703 885 ntBASIC16.8■□□□□ 0.28
CACNA1AO00555 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.8■□□□□ 0.28
CACNA1AO00555 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.8■□□□□ 0.28
CACNA1AO00555 AC112698.1-201ENST00000510299 916 ntBASIC16.8■□□□□ 0.28
CACNA1AO00555 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.8■□□□□ 0.28
CACNA1AO00555 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.8■□□□□ 0.28
CACNA1AO00555 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.8■□□□□ 0.28
CACNA1AO00555 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.8■□□□□ 0.28
CACNA1AO00555 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.8■□□□□ 0.28
CACNA1AO00555 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CACNA1AO00555 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CACNA1AO00555 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.8■□□□□ 0.28
CACNA1AO00555 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
CACNA1AO00555 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CACNA1AO00555 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.8■□□□□ 0.28
CACNA1AO00555 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 FAM86C2P-203ENST00000528684 1004 ntBASIC16.8■□□□□ 0.28
CACNA1AO00555 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
CACNA1AO00555 AC084121.4-201ENST00000641598 221 ntBASIC16.8■□□□□ 0.28
CACNA1AO00555 AF228730.8-201ENST00000642140 221 ntBASIC16.8■□□□□ 0.28
CACNA1AO00555 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CACNA1AO00555 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CACNA1AO00555 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CACNA1AO00555 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms