Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 AP002469.2-201ENST00000531724 424 ntBASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 AC096633.1-201ENST00000422446 749 ntBASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 AC007967.3-201ENST00000434308 558 ntBASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMIM28A0A1B0GU29 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMIM28A0A1B0GU29 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.27■□□□□ 0.67
SMIM28A0A1B0GU29 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SMIM28A0A1B0GU29 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SMIM28A0A1B0GU29 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMIM28A0A1B0GU29 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMIM28A0A1B0GU29 REXO1L9P-201ENST00000604264 2108 ntBASIC19.27■□□□□ 0.67
SMIM28A0A1B0GU29 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 AP001269.4-201ENST00000609611 512 ntBASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.26■□□□□ 0.67
SMIM28A0A1B0GU29 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms