Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A3BPQ9Y5P4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 NOC2LP2-201ENST00000407594 1944 ntBASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 AL096828.2-201ENST00000567259 1965 ntBASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 HCG11-201ENST00000411553 5696 ntBASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A3BPQ9Y5P4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 BCL2-203ENST00000589955 5011 ntBASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 AL133373.2-201ENST00000623187 2828 ntBASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 CLEC4GP1-201ENST00000596555 870 ntBASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 KRT18P1-202ENST00000452408 1331 ntBASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL4A3BPQ9Y5P4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
COL4A3BPQ9Y5P4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL4A3BPQ9Y5P4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms